Protein Info for MPMX19_00255 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR02122: TRAP transporter solute receptor, TAXI family" amino acids 26 to 333 (308 residues), 281 bits, see alignment E=4.9e-88 PF16868: NMT1_3" amino acids 34 to 333 (300 residues), 313.1 bits, see alignment E=1.1e-97

Best Hits

Swiss-Prot: 50% identical to BCSP_BRUME: 31 kDa immunogenic protein (bcsP31) from Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)

KEGG orthology group: K07080, (no description) (inferred from 85% identity to azl:AZL_003850)

Predicted SEED Role

"TRAP transporter solute receptor, TAXI family precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (386 amino acids)

>MPMX19_00255 hypothetical protein (Azospirillum sp. SherDot2)
MGGVALAPLLGGGLLAGGLLGGPAAAQDLRYFRIGTGTTSGTYFPIGGLIANAISNPPGS
RPCDKGGSCGIPGLIVVAQASNGSVDNVEMLRAGTVEAGFAQADVAYWAYSGTGSFTGKR
PFTELRSLGMLYAEAIQIVVRSDGFIDRMADLKGRSISLGEEGSGTLVEARLILDAYGLS
ESTITPLYLKPGTAADRLAKGELDGFFMVGGYPVAAVSDVAARVPIRLVPLDGEPADRLL
RSQRFYIEQEIPANAYPGSANTPTLSLGAELLTRADRDPDLIYGVVRALWHENTRRVLAD
GHPQGRNFDPARAVANVSVPLHPGAERFYREAGLLGSAANEPARSPSNATDIPPTAGDKA
ANGAANGAPPAERNTSGKSTEDKPPR