Protein Info for MPMX19_00210 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 176 transmembrane" amino acids 25 to 50 (26 residues), see Phobius details PF05751: FixH" amino acids 24 to 172 (149 residues), 121 bits, see alignment E=2.3e-39

Best Hits

KEGG orthology group: None (inferred from 91% identity to azl:AZL_003390)

Predicted SEED Role

"Type cbb3 cytochrome oxidase biogenesis protein CcoH" in subsystem Biogenesis of cbb3-type cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (176 amino acids)

>MPMX19_00210 hypothetical protein (Azospirillum sp. SherDot2)
MSISTTTGNRPLPPKRLKAPRQPGWYIPWIFVGVFMIVLAVNGVMVHFAVSSWTGIETEN
HFIKGLGYNNDLAGARAQAERGWQVQPDFTSTEPRKGVIAITVRDKQGQILKDATVTVTM
IRPISEGHDKTLSLPYLGEGRYGAPVELDLEGQWDMRFVITHAAGDYQDRKRVWVQ