Protein Info for MIT1002_04214 in Alteromonas macleodii MIT1002

Annotation: Blue-light-activated protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 853 PF00072: Response_reg" amino acids 17 to 127 (111 residues), 93.4 bits, see alignment E=1.5e-30 PF00512: HisKA" amino acids 488 to 545 (58 residues), 33.9 bits, see alignment 3.9e-12 PF02518: HATPase_c" amino acids 590 to 710 (121 residues), 75.8 bits, see alignment E=5.4e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (853 amino acids)

>MIT1002_04214 Blue-light-activated protein (Alteromonas macleodii MIT1002)
MNNNSDVRRSNTSRADILVVEDSPTQAQKLAWLLEQANYSVRTVSNGREALQRMKVQLPE
LVITDVVMPEMDGYELSETIRNEFGFDVPVMLVTSLKSASDVLRGLKVGADNFLTKPYQN
DYLLDQVDYLLSNRRLRGKRKMELGIEIEFGGERHFITADRQQILDLLISTYHESVYLNQ
ELEHQSMKLKKQLQLQNIQMRLSNDLQACLSIEELFCTASKLLVSLEQVEAVWFCEGVEN
DHIKVLKSTHPHLKSGKIVPQCTCMKTVASDAENSPKACLLTESLQSQGKHHYLPLKFDK
GHAYSLHFFLTEESIKYEDLSTFFATCLQQIETNLDRITLLNALEKKVELRTTELANSEK
RFRAISESALFGVAIVSGDLIVEFLNDTAKSLLKYQNLQDIKLREVINLNTIPATFNEDI
DASWMGRPFPGEMIDADGNALSALLMLSPLNDDTPSLLLSFIDLTDLKQAEDKLAHMQRL
ESVASLSGGIAHDFNNLLSIILGSTDTLTDNTATLEEKREATQSIIRAASSGSELSNQLL
TFARRKPVRGEFIKVSSFFTSLSKFILRLLPTNIQLNFICENPDLEVFTDYSQLENVFLN
LAINSRDAMPNGGQIIVSAELAERINDVETLTDSAIKGDFVKMEVKDNGIGIPPEIQEKI
IEPFFTTKEEGKGTGLGLAMVYGFIKQCNGYIKIESNGEGTTVTLLLPLAHSIDVRLKEN
SLLTNATNSSGESILIVEDNEEVALIVKRHLTALGYKPLLATSFQKAELLLTQNCEDIAL
VITDYFLDGKHTGEEIVSLVGKVSPSMPVILATGSDFNGFQVSGNNHSKCRLLRKPYRRE
ELNNVIKELLPKS