Protein Info for MIT1002_04129 in Alteromonas macleodii MIT1002

Annotation: putative nucleotide-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 160 PF04461: DUF520" amino acids 2 to 159 (158 residues), 210.1 bits, see alignment E=1.1e-66

Best Hits

Swiss-Prot: 95% identical to Y4099_ALTMD: UPF0234 protein MADE_1020535 (MADE_1020535) from Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype)

KEGG orthology group: K09767, hypothetical protein (inferred from 95% identity to amc:MADE_04099)

Predicted SEED Role

"FIG001943: hypothetical protein YajQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (160 amino acids)

>MIT1002_04129 putative nucleotide-binding protein (Alteromonas macleodii MIT1002)
MPSFDIVSEINMEEVRNATENASRELSTRFDFRGIDASFEYKDKTVVMKAEAEFQLQQME
SMFRTAMSKRNVDTSSMDVKPYDAHGKTYRQTITFKEGIEQPMAKKIVKLVKDAKIKVQT
AIQGEELRVTGKKRDDLQQVISLVKESNLGQPFQFKNFRD