Protein Info for MIT1002_04113 in Alteromonas macleodii MIT1002

Annotation: ATP synthase subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 461 TIGR01039: ATP synthase F1, beta subunit" amino acids 3 to 460 (458 residues), 851.4 bits, see alignment E=8.3e-261 PF02874: ATP-synt_ab_N" amino acids 6 to 74 (69 residues), 56.9 bits, see alignment E=3.8e-19 PF00006: ATP-synt_ab" amino acids 131 to 343 (213 residues), 238.9 bits, see alignment E=7.2e-75 PF22919: ATP-synt_VA_C" amino acids 351 to 428 (78 residues), 57.2 bits, see alignment E=2.1e-19

Best Hits

Swiss-Prot: 100% identical to ATPB_ALTMD: ATP synthase subunit beta (atpD) from Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype)

KEGG orthology group: K02112, F-type H+-transporting ATPase subunit beta [EC: 3.6.3.14] (inferred from 100% identity to amc:MADE_04083)

MetaCyc: 87% identical to ATP synthase F1 complex subunit beta (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"ATP synthase beta chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (461 amino acids)

>MIT1002_04113 ATP synthase subunit beta (Alteromonas macleodii MIT1002)
MSQGKVVQIIGAVVDIEFPQDAVPRVYDALRVTEGDLSGLTLEVQQQLGGGVVRGIALGT
TDGLKRGLAVENTGNPIMVPVGTKTLGRIMDVLGNPIDEAGPIGEEERMSIHREAPSYED
QSSSVELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGFSVFAG
VGERTREGNDFYHEMNESNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVL
FFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSIQAVYV
PADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPLVIGQEHYDVAR
GVQTVLQRYKELKDIIAILGMDELSEEDKQVVSRARKIQRFLSQPFFVAEVFTGAPGKYV
SLKDTISGFKGILDGEYDHLPEQAFYMVGSIEEALEKAKKA