Protein Info for MIT1002_04104 in Alteromonas macleodii MIT1002

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 36 to 38 (3 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 126 to 145 (20 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 203 to 221 (19 residues), see Phobius details amino acids 233 to 252 (20 residues), see Phobius details amino acids 280 to 300 (21 residues), see Phobius details amino acids 320 to 341 (22 residues), see Phobius details amino acids 353 to 371 (19 residues), see Phobius details PF07786: HGSNAT_cat" amino acids 12 to 227 (216 residues), 60.7 bits, see alignment E=1.5e-20

Best Hits

KEGG orthology group: None (inferred from 54% identity to ilo:IL2589)

Predicted SEED Role

"FIG01058605: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (389 amino acids)

>MIT1002_04104 putative membrane protein (Alteromonas macleodii MIT1002)
MAKMSSSIQRNRIRSIDMMRGLVMLIMLIDHVRERFFLHLQVSDPMDIDTTSPSLFFTRL
AAHYCAPTFVFLTGLSAWLYANPMDSANKAKPTRNVREFLIKRGLFILFLEVTFITFSWG
ASFQTLYLQVMWAIGISMIALAVLSYLPRTLLLILGLLIVFGHNALTPISYVPHETGYTL
WTMLHDRGYILQSAALNIKVSYPVLPWIGVILLGYACGPLYSQQLDKARRGRWLLGLFAV
SLSLFFLLRGSNIYGETLPWELQQSAITTLMSLLNLTKYPPSLAFLLFTLAGMFLLLFAF
ERVKDTQFAFLDTFGSVPMFFYILHLYVLLVMYGIAFFIWGANKGKYVGVDHIWQIWLIA
AGLSLVLYFPVKWFSAYKSKHHAPWLKYL