Protein Info for MIT1002_04102 in Alteromonas macleodii MIT1002

Annotation: Inner membrane symporter YicJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 535 transmembrane" amino acids 27 to 56 (30 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 248 to 265 (18 residues), see Phobius details amino acids 271 to 289 (19 residues), see Phobius details amino acids 312 to 336 (25 residues), see Phobius details amino acids 348 to 365 (18 residues), see Phobius details amino acids 377 to 395 (19 residues), see Phobius details amino acids 401 to 422 (22 residues), see Phobius details amino acids 443 to 470 (28 residues), see Phobius details amino acids 490 to 511 (22 residues), see Phobius details PF13347: MFS_2" amino acids 12 to 219 (208 residues), 201.9 bits, see alignment E=2.2e-63 amino acids 272 to 513 (242 residues), 127.4 bits, see alignment E=8.9e-41 PF07690: MFS_1" amino acids 25 to 457 (433 residues), 45.1 bits, see alignment E=1e-15 PF12832: MFS_1_like" amino acids 30 to 461 (432 residues), 28 bits, see alignment E=1.7e-10

Best Hits

Predicted SEED Role

"2nd GPH family transporter in unknown oligosaccharide utilization Sde 1396"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (535 amino acids)

>MIT1002_04102 Inner membrane symporter YicJ (Alteromonas macleodii MIT1002)
MNHKLTLKEKVGYGMGDAAANLVWRGALAYLAVFYTDTFGITAAAAAMLFLVVRLSDGVT
DIIMGMIADRTQTKMGKFRPWILGSTPFLGLFMVLCFTTPDLSYSGKLIYAYLTYIGLTL
AYTVNNVPYSALMGVMTSDDRERTSLSGFRFAGAFFGGLLVMGCLPMLVDLLGQGNTAVG
YQYTMWLFATLLVILMCVTVFTTKERVTLQQVSKPQDTKLDSPKTETGTQVAPAPRSLTS
ELIDLGKQLPLILVPLSAITAFFYYRDVVTGAIFITVIALTTIAIKRLTRRPEAENTRSQ
QDIIDLLSNKPWLILLGMGFLTMMFNGIKYGVIAYYFKYYMGNELLTGYFFISLLVVSIF
GALATSKLAAMFGRKKLFIIALLASSVLTSGIYFVPQKSVSAIFILGCSAEFFAAILPTL
FFSMLGDSADYSEYKTGRRATGLVYSAGSFVQKTGGGFAGALVLLVLGSYGYNGLDINTI
DQTLPGMKSLMSWIPALFGFAGAALICLYPLNDEKQKEVTQALLSRRSEQPSISA