Protein Info for MIT1002_03971 in Alteromonas macleodii MIT1002

Annotation: Alpha-xylosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 807 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13802: Gal_mutarotas_2" amino acids 45 to 214 (170 residues), 73.2 bits, see alignment E=7.1e-24 PF01055: Glyco_hydro_31_2nd" amino acids 257 to 581 (325 residues), 301.3 bits, see alignment E=2e-93 PF21365: Glyco_hydro_31_3rd" amino acids 589 to 672 (84 residues), 68.9 bits, see alignment E=8.8e-23 PF17137: DUF5110" amino acids 692 to 764 (73 residues), 43.4 bits, see alignment E=5.8e-15

Best Hits

KEGG orthology group: K01187, alpha-glucosidase [EC: 3.2.1.20] (inferred from 79% identity to amc:MADE_03950)

Predicted SEED Role

"Alpha-glucosidase (EC 3.2.1.20)" in subsystem D-Galacturonate and D-Glucuronate Utilization or Maltose and Maltodextrin Utilization (EC 3.2.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.20

Use Curated BLAST to search for 3.2.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (807 amino acids)

>MIT1002_03971 Alpha-xylosidase (Alteromonas macleodii MIT1002)
MIDRQLRVSLACAGFALFSANALAEVQTATLENATLTIDTDTNDFKIKALRNNSFQVTYL
TDGKGAPYANLPSMALPEEATSAVTKDIAGDVELEETATTLTLKFNNISAHVDKSTHVIS
YSVNGKVVAKEQDGLNISDNGVSLSFALDENEKLYGGGQRVLGMDRRGHSMPLYNKAHYG
YTTSSNQMYFGLSAVMSSKNYSVLFDNTASGELDIGKTNRDELLFKAQGGRASYIMVLGE
NLEDTVRSTVAVTGKQPLPPRWLLGNFASRFGYKSQNEVMDVVDAFNTQDIPVDAVVLDL
YWFGKDIKGHMGNLSWDAATFPEPEKMISELRAQDVKTVLITEPFILTTSKQWDSAVASN
ALAQNDDGAPYTFDFYFGNTGLVDVFSEAGQNWFWQYYEKLAAQGVAGWWGDLGEPEVHP
DDIQHMWQSTKVSGAEVHNAYGHQWAKTVYNNLTELQPDTRPFVLMRSGFLGSQRYGMVP
WTGDVSRSWGGLKPQVELALQMSVFGMAYTHSDLGGFAGGETFDPELYTRWLQFGTFSPV
FRPHAQDNIAPEPIFHADPVKTIARKFIQLRYDMLPYNYSLAFENALYGTPLMRPLAMAY
GESDWFENADSYLWGDGLLVSPVTSANQAEWPTLLPEGVWFDFFSDTKYQGGQTVNYPLS
QDNYPVWVKAGSFMPMTKGLSRTEQFDARKIEMHYWHDNSVNSSSYTYYEDDGKNPASVK
KGLYTKLLLNASVDENAALTLTLDSEGSYIGMPKQRDITYVVHGLSEKPQSVSLDGRSVP
VMWDEKGKTLSLAISCDYQQSVKVVIM