Protein Info for MIT1002_03844 in Alteromonas macleodii MIT1002

Annotation: D-xylose transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 522 transmembrane" amino acids 9 to 33 (25 residues), see Phobius details amino acids 48 to 66 (19 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 176 to 198 (23 residues), see Phobius details amino acids 259 to 283 (25 residues), see Phobius details amino acids 297 to 319 (23 residues), see Phobius details amino acids 326 to 346 (21 residues), see Phobius details amino acids 417 to 440 (24 residues), see Phobius details amino acids 451 to 472 (22 residues), see Phobius details amino acids 479 to 500 (22 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 10 to 350 (341 residues), 246.2 bits, see alignment E=3e-77 PF00083: Sugar_tr" amino acids 12 to 345 (334 residues), 256 bits, see alignment E=7.1e-80 amino acids 412 to 518 (107 residues), 93.9 bits, see alignment E=1.1e-30 PF07690: MFS_1" amino acids 16 to 341 (326 residues), 102.7 bits, see alignment E=2.1e-33 amino acids 417 to 510 (94 residues), 34.9 bits, see alignment E=8.8e-13

Best Hits

KEGG orthology group: None (inferred from 91% identity to amc:MADE_03799)

Predicted SEED Role

"D-xylose proton-symporter XylE" in subsystem Xylose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (522 amino acids)

>MIT1002_03844 D-xylose transporter (Alteromonas macleodii MIT1002)
MNKALSPSLYYTLIVSLGGFIFGFDASVIAGANGFIDAEFNLSDWQQGFVVSSPTLGALI
AMLFAGGVSDAIGRRKALILVAFLYLLSSVGSALAPNFELLVLSRFIGGIAFCSLIIAPL
YISEISAPENRGKMVSVNQLNIVFGFALSYFTNYYLLQLSNSGAGWVTEWSIDTHLWRYM
LGLEVIPAALWFGLLFTIPRSPRWLVLKGQHEEAEQVINRLFDKAQASALVEDIASSLKE
KSWPFRERLGFLKAKAMRFPLMVGIIIAIAQQITGINVIFFYAPTIFEQSGVGTNAAFMQ
AVWIGLVNVAFTVVAMLTIDKWGRKPLLLIGLTGVVISMSICTYGFKQATYQVQQTAINE
IQQDAPSVAIKLTPLTSDIYYSDVEFKRTLKTTLTSDEYDAYQQPLLTSSINMNAPLVLF
GIIAFVASFAMSLGPVMWAMLAEIFPNQTRALAISLVGMVNSLTSFLVQVVFPWELANLG
AAATFAIYGGFALVSLILVAKLFPETKGRTLEEITEEFERCA