Protein Info for MIT1002_03832 in Alteromonas macleodii MIT1002

Annotation: Alpha-xylosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 688 PF13802: Gal_mutarotas_2" amino acids 67 to 203 (137 residues), 63.9 bits, see alignment E=3.7e-21 PF01055: Glyco_hydro_31_2nd" amino acids 250 to 571 (322 residues), 289.9 bits, see alignment E=4.6e-90 PF21365: Glyco_hydro_31_3rd" amino acids 582 to 664 (83 residues), 56.6 bits, see alignment E=4.3e-19

Best Hits

KEGG orthology group: K01811, putative family 31 glucosidase (inferred from 80% identity to alt:ambt_20115)

Predicted SEED Role

"Alpha-xylosidase (EC 3.2.1.-)" in subsystem Xylose utilization (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (688 amino acids)

>MIT1002_03832 Alpha-xylosidase (Alteromonas macleodii MIT1002)
MSNAFCVNEPEWNDIKAADITEQPFLSDDKTLIVPTQYGELSLSISQFGLRIQSDVNAAD
DFGMLTQAPERLSLVLSGDQSHSTLAAGDYRLEVFAAPLHFKLYKNDVLVQQSATDGHFV
RQHRLPPFAKTDKGWLVSLELSYDEAVYGLGEKWGKLDKRGQLIRSYNHDALGVNAEKSY
KNTPYAWSPEGWNLFVHTPAPVTHGVGYALWSQRAYVCLVEDNLLDMFLFHQDSPAQSLK
AYSELTGFAPTPPTWSLGVILSKAYYKDADELLAVAREVREKNMPCDVITLDGRAWQDTD
TRFAFEWDPKRYADPQPVIDELKALGFKICVWEYPMISVKNPLYKKAAEKGWLIKDKRTG
EAYRYAWDLSPFGEVLTPLPDSGILDFTNPEAYEFWKTSHKPLFDLGVDMIKADFGEQLE
DDNMLSYSGDSGNRLHNVYSMLYNRCVYEAADAYCKTGPFLFSRSAWTGSQRYPSQWGGD
PQADWHGLAASIRGSLSWGMSSGPFFATDIGGFYKDTRDAELYVRWAQASVFSAHMRLHG
IGPREPWSYGDAASNAVFEALKLRYKLIPYLKETAEKASQTGLPVQRAMALAFPEQPLSH
GFEQQFMCGDDLLVVPCVVPGGKIKYYLPKGEWIRFGTEEVVQGEQYREEILALNDVAVF
IQKGCRIVMGPDVQHTDMDMSNTTHWPA