Protein Info for MIT1002_03793 in Alteromonas macleodii MIT1002

Annotation: Nicotinamide nucleotide repair protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 TIGR00197: YjeF family N-terminal domain" amino acids 18 to 216 (199 residues), 140 bits, see alignment E=8.3e-45 PF03853: YjeF_N" amino acids 37 to 196 (160 residues), 135.5 bits, see alignment E=1.9e-43 TIGR00196: YjeF family C-terminal domain" amino acids 241 to 497 (257 residues), 226.2 bits, see alignment E=5e-71 PF01256: Carb_kinase" amino acids 255 to 492 (238 residues), 203.2 bits, see alignment E=4.6e-64

Best Hits

KEGG orthology group: None (inferred from 96% identity to amc:MADE_00644)

Predicted SEED Role

"NAD(P)HX epimerase / NAD(P)HX dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (499 amino acids)

>MIT1002_03793 Nicotinamide nucleotide repair protein (Alteromonas macleodii MIT1002)
MLDTQLTSSLSYKLFRADQVRENEGQAAADSGCDMFTLMQRAGDVVFKQCLELMPNSDVY
LVLVGQGNNAGDGYIAAINAKLAGKQVHLCAVEPERTLEGDAGKAQQRWLDSGGSINGFD
AALLEKSDVVIDALLGTGINSYIRNEFADIIDAVNASSTPVVSVDVPSGLDANTGQSLGR
CVQADITVTFVGIKPGLVTGAGKQSCGKLVYADLGIGKAFQALAKASATMLNIDHFKGMG
PREINSHKGTYGRLLCIGGNRGTAGAIRLASEAALRSGAGMVRVYTHESSVVQVSAGRPE
LMVTDFNLEDALAWATCVVIGPGLGQDEWAEGTFETTMKHCQSQNKPVVIDADALNLLCQ
QSTAYTLSDSILTPHAGEAARLLGVSIDDVESDRFNYARQCSQRYHAVCVLKGAGTLIDN
EKKTWVCRHGNPGMATAGSGDVLSGILGALLAQGVETDIAAKYGVVLHAKAGDDIAQLYG
QRGMIASDLFDAVRALINH