Protein Info for MIT1002_03769 in Alteromonas macleodii MIT1002

Annotation: Elongation factor P-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 PF08207: EFP_N" amino acids 3 to 62 (60 residues), 58.6 bits, see alignment E=7.3e-20 PF01132: EFP" amino acids 70 to 123 (54 residues), 48.8 bits, see alignment E=8.5e-17 PF09285: Elong-fact-P_C" amino acids 132 to 187 (56 residues), 82.5 bits, see alignment E=2e-27

Best Hits

Swiss-Prot: 75% identical to EFPL_MARMS: Elongation factor P-like protein (Mmwyl1_2075) from Marinomonas sp. (strain MWYL1)

KEGG orthology group: K02356, elongation factor P (inferred from 98% identity to amc:MADE_00667)

Predicted SEED Role

"Translation elongation factor P-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (191 amino acids)

>MIT1002_03769 Elongation factor P-like protein (Alteromonas macleodii MIT1002)
MPKASEIKKNNTVVFDGKTCIVRDIERSVPQGRAGGSIYRMRMYDVVTGAKYDETFKDSD
TLDMADLIRRPAMFSYVDGDEYIFMDKEDYTPYHLNKESIENEALFINEDTDGIQVVIVS
EVPVALDLPMSVELEVVETDPSIKGASATSRTKPATLSTGLVVQVPEYISTGEWIKVNTE
ERKFQSRADKH