Protein Info for MIT1002_03755 in Alteromonas macleodii MIT1002

Annotation: L-fucose permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 100 to 123 (24 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details amino acids 259 to 278 (20 residues), see Phobius details amino acids 289 to 311 (23 residues), see Phobius details amino acids 317 to 335 (19 residues), see Phobius details amino acids 350 to 371 (22 residues), see Phobius details amino acids 383 to 404 (22 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 367 (351 residues), 142.8 bits, see alignment E=1.9e-45 PF00083: Sugar_tr" amino acids 43 to 186 (144 residues), 32.6 bits, see alignment E=6.4e-12 PF06609: TRI12" amino acids 45 to 211 (167 residues), 25.5 bits, see alignment E=7e-10

Best Hits

KEGG orthology group: None (inferred from 97% identity to amc:MADE_00677)

Predicted SEED Role

"Predicted sucrose permease, MFS family, FucP subfamily" in subsystem Sucrose utilization or Sucrose utilization Shewanella

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (422 amino acids)

>MIT1002_03755 L-fucose permease (Alteromonas macleodii MIT1002)
MPNHDPSSRIIRWLTYLMFMMFAMTSDSVGEIIKEVKVAFSVTNAQASLMHSLPMLGIAL
SGLFLGFLADKLGRKPTIIIGLALFGLACYSFLIANDFVLIVSLMSLSGVAVGIFKTGAL
ALIGDISTSTKQHTATMNGAEAFFGVGAIIGPLIVAYLIHQGVAWQWLYVIAGGVCTLLI
IGALLVKYPAYTRDTASGEKKVSIAQSLSLVKNPYALGFSVGAFLYVAAESAIYVWMPSY
LVCDATTLKATYDCYTEGFSQTLAIYSVTAFFILRAAGRFVGIWMMSHFNWALVLMVFTG
AIVLCFGLGLWGGKQLALFLFPLTGIFMSVIYPTFNSKGISCFPKHQHGSVAGVILFFTA
AGAAAGPFIMGLVSDANGGDAKYGFMVATGFAAVLFVGLVYNYIKNPTKERLAEIEASEY
AN