Protein Info for MIT1002_03708 in Alteromonas macleodii MIT1002

Annotation: Carbon starvation protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 563 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 86 to 109 (24 residues), see Phobius details amino acids 130 to 155 (26 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details amino acids 185 to 206 (22 residues), see Phobius details amino acids 222 to 243 (22 residues), see Phobius details amino acids 252 to 270 (19 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details amino acids 328 to 352 (25 residues), see Phobius details amino acids 390 to 411 (22 residues), see Phobius details amino acids 432 to 454 (23 residues), see Phobius details amino acids 461 to 486 (26 residues), see Phobius details amino acids 494 to 512 (19 residues), see Phobius details amino acids 524 to 547 (24 residues), see Phobius details PF02554: CstA" amino acids 1 to 348 (348 residues), 372.1 bits, see alignment E=3e-115 PF13722: CstA_5TM" amino acids 390 to 509 (120 residues), 107 bits, see alignment E=8.1e-35

Best Hits

Swiss-Prot: 50% identical to CSTA_AQUAE: Peptide transporter CstA (cstA) from Aquifex aeolicus (strain VF5)

KEGG orthology group: K06200, carbon starvation protein (inferred from 96% identity to amc:MADE_03566)

Predicted SEED Role

"Carbon starvation protein A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (563 amino acids)

>MIT1002_03708 Carbon starvation protein A (Alteromonas macleodii MIT1002)
MQSIAIVILGIIGMLLGWFVYSKFIASRIFKLDDSFVTPAHTMKDGVDYVPTNKVVLWGH
HFTSVAGAAPIVGPAIAVYWGWVPAVLWVVFGTILFAGVHDMGALWASARHKGKSMGALS
ETVIGKRSRSLFMIVIFLVLLMVNAVFGVVIANSFVSQPNAVFPAWMAIAVALVIGQLLK
RNFSLIPLCIVGIIVLYASVYAGSYIPLSLPETMFGLADKANWIIILFIYAAIASLLPVW
MLLQPRDFINGMQLLVGLFLLYGAVFFAMPDITAPAFNAQTAVDSPSLIPLLFVTIACGA
VSGFHGIVSSGTSSKQLDKETDARFVGYLGAVGEGSLALITIVAVSGVAFAASPEEWHEV
YSHLGAGSVGAFITGGANLIQQGWGLPVDFSSTILAVMVVLFAGTTMDSGVRLQRYIIQE
WGDIYSIGALKNGVVATLVAVGCCLLLAFGAGGASGSGGMIIWPLFGSTNQILASLTLLV
ISVMLIKLGRPAKYTLIPMVFVLIMAFFAGLIKLKEYYVEGNYLLVFLDAVVLIVSVLVM
LEAFSVVSKLKKESKLKKEQANG