Protein Info for MIT1002_03706 in Alteromonas macleodii MIT1002

Annotation: Magnesium and cobalt efflux protein CorC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 57 to 76 (20 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details PF01595: CNNM" amino acids 9 to 178 (170 residues), 99.1 bits, see alignment E=2.5e-32 PF00571: CBS" amino acids 265 to 315 (51 residues), 34.6 bits, see alignment 2e-12

Best Hits

KEGG orthology group: None (inferred from 96% identity to amc:MADE_03564)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (359 amino acids)

>MIT1002_03706 Magnesium and cobalt efflux protein CorC (Alteromonas macleodii MIT1002)
MLLLIVYVFIALGFSFLCSIAEAVILSVSSAYISVLEKEGKASGALLRKQTDNINTPLSA
ILTLNTIAHTMGAAGAGAQAAAVFGDAYLGVISAVLTLLILIFSEIIPKTLGATYWRTLA
PVTAYFLKYLSIVLMPFVKMSELMTKGFKEDSPLRGLSRSELHAMAELSGQEGQLANHEA
AFLQSLLSLHELKVKDAITHRTALFKVSESMTVEGFFHKHANIEFSRIPVFEDSDSENIT
GFVMRSDLLVAQARGNTDKPLSEYAKDMVTVLNTMPLSVTFEHFINKHVHMLLVVDEYGG
LEGVLTLEDLLERLLGVDIVDEKDTTVSMRRLAKMMMKRKEQMMIKNVPDASLESSSKK