Protein Info for MIT1002_03676 in Alteromonas macleodii MIT1002

Annotation: putative N-acetyltransferase YjcF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 200 to 221 (22 residues), see Phobius details PF00583: Acetyltransf_1" amino acids 19 to 122 (104 residues), 62.7 bits, see alignment E=8e-21 PF13673: Acetyltransf_10" amino acids 38 to 132 (95 residues), 33.9 bits, see alignment E=5.8e-12 PF13508: Acetyltransf_7" amino acids 49 to 124 (76 residues), 44 bits, see alignment E=4.7e-15 PF09500: YiiD_C" amino acids 157 to 296 (140 residues), 173 bits, see alignment E=7.3e-55 TIGR02447: putative thioesterase domain" amino acids 164 to 296 (133 residues), 143.8 bits, see alignment E=1.5e-46

Best Hits

KEGG orthology group: None (inferred from 97% identity to amc:MADE_03531)

Predicted SEED Role

"GNAT family acetyltransferase YiiD potentially involved in tRNA processing"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>MIT1002_03676 putative N-acetyltransferase YjcF (Alteromonas macleodii MIT1002)
MYKVVTPKSDAEFEAYFHFRWEHLRQPWNFPPGSEKDEYEQVAEHRIITNRNGEIVACGR
VHLNTAEEAQIRHIAVHPGHQRKGLGQMIMAALENVAKDLGAERAVTNSREISIDFFSAC
GFEVEREAPNELGMLKRQQMVKKFTENNTLVLHPKWCKSLQETWSETIPITEHMGIKLYQ
YTGRTLETRASLNKNINIHGTMFAGSIFSLATLTGWGMIYLQLKERGLDGDIVLGDGDIH
YHKPITMKPRAICNIETLSGKFKPLENDNKARFELSVAILDGDTPVAEFEGVFYVLPPSK
NEEE