Protein Info for MIT1002_03641 in Alteromonas macleodii MIT1002

Annotation: putative iron-regulated membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 signal peptide" amino acids 9 to 11 (3 residues), see Phobius details transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details amino acids 178 to 201 (24 residues), see Phobius details amino acids 330 to 351 (22 residues), see Phobius details PF03929: PepSY_TM" amino acids 6 to 353 (348 residues), 168.5 bits, see alignment E=1.6e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (357 amino acids)

>MIT1002_03641 putative iron-regulated membrane protein (Alteromonas macleodii MIT1002)
MKLWVRRLHLILALVCGLFIICLSITGALLIYAKDIQTFVQPEKWTIESYESPLPLSYIV
NALEDETGQKVELLMPESDPELAWQGKLNNGEYVSVNPNSAEILHRYDYYSTFYGFTMAI
HRWLLYQDGDNERPLRNWVSVSALVLLLEVIVGFYLWVKPKNRIKRLAIKRRAKFRILMY
QLHTVLGVYLAIPLILIAFSGMAFNWKSATQQVVETVTFSKVEKRPVPEPLSHDASSASV
AIDTSYQNAIAVFPNASLFRIYFPKNSGEHLGFRMQNPGESHAYSWVWTNPQNGEITGYY
DASKANVATQVWNFKYKFHIGDFAGPLLEFIWLSIALLPAFFTITGFYFWYKRHFRQ