Protein Info for MIT1002_03636 in Alteromonas macleodii MIT1002

Annotation: Sensor protein ZraS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 555 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 155 to 178 (24 residues), see Phobius details PF00672: HAMP" amino acids 174 to 230 (57 residues), 34.5 bits, see alignment 3e-12 PF02518: HATPase_c" amino acids 438 to 543 (106 residues), 86.8 bits, see alignment E=2.1e-28 PF14501: HATPase_c_5" amino acids 438 to 532 (95 residues), 22.2 bits, see alignment E=1.7e-08

Best Hits

KEGG orthology group: None (inferred from 87% identity to amc:MADE_03495)

Predicted SEED Role

"sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (555 amino acids)

>MIT1002_03636 Sensor protein ZraS (Alteromonas macleodii MIT1002)
MKLSLRIKTITGIASIAALLLLVLIVTVFQLLNDLVDSNIKKSADTTVALFVSTTKNAFL
SYDLAALDADVSEILTNPNIAYVKVKDKLGRVFVEKGNTNALNRPFTADTSVSDADDGIY
DTRAPIMVNRTLYGYVEIGLNIASVTESVSRVRNWTVTLAFLEFILVGLCSYLLGSYLMS
QLHQLHEGAKRLGDAVKNNSYQDVFVPVRGTDELSELAEAFNQLVERLKEEHAQRQYAQD
ELKELNTLLEEKVQDRTALLHQKNYQLQEANKDLKETQVQLLQAEKMASVGQLAAGVAHE
INNPVGFVSSNISTLSEYVATYQMIFSQINAVLNEQDEGKRASALSELEKMLANQDMAFI
NEDITDLLSDSRDGLSRVAEIVKGLKLFSRVDSDHMQQHNINDCVRTTLAMVNNQLKYIC
TVETHLGKVPDVAMNVGKVSQVVTNLLINAGQAIESTGKNGKVTITTCTAGKFVELRVED
TGCGIPSSHLDKLFNPFFTTKPEGQGTGLGLSISFGIAQEHGGTLSATSKEGEGSIFTLA
LPLVSHSDKTLESEG