Protein Info for MIT1002_03413 in Alteromonas macleodii MIT1002

Annotation: outer membrane protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 587 transmembrane" amino acids 292 to 313 (22 residues), see Phobius details PF00691: OmpA" amino acids 480 to 565 (86 residues), 38.3 bits, see alignment E=7e-14

Best Hits

KEGG orthology group: None (inferred from 83% identity to amc:MADE_03624)

Predicted SEED Role

"Mll3244 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (587 amino acids)

>MIT1002_03413 outer membrane protein A (Alteromonas macleodii MIT1002)
MTEKVPPSELSDNSLDKVRELLIGRDDKFVQEKLNRDAKGIVTNVVSEALFERETKDGSV
NKVLVPLVEKSLHRSIEANSDKIVGTLYPLVGTLVRKAVSSFLVEFVERTNALIENSLSP
KSVSWRFKAWQSGVRYSEFVASQIYQYQVQQLLVIHRETGTLLHSISSDPDKEKDADLIS
SMLVAINDFVADAFGVTSTESENELGEIKTEDFTLLIKIGPQALLVAAVTGSIPPEVRGK
LQQALEDFHQFYQQPLLTYEGDNAPFDGCETILSDCLISEKKEGEGKKSNRLIGALVLLV
IFFALAVLSFMRLSLSILKSDLHELPPPPGIIVTDTYVSNGNVHAKVLRDPVATSIEQWF
SDNNIDAERVTVIEEPFVSLKPSVVERKLEKLVSDYPLSESESLLIKKGDDRSFIISGTV
FTPTAINFTQQINAIPGISTVNVDTTALNVKAAYQIDNAELQKAALNRLVNKVSSQNVLF
ATNQEALSEVQLAKLEPLANDIKQLLTLADKTKTVVSIVVMGASDNSGSSARNRALSQKR
AENVVNSLISLGVESDILIPVSLGELPLQKASMGRSVMLNVLISSEQ