Protein Info for MIT1002_03343 in Alteromonas macleodii MIT1002

Annotation: Potassium efflux system KefA precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 479 transmembrane" amino acids 64 to 82 (19 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 137 to 159 (23 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details amino acids 204 to 223 (20 residues), see Phobius details amino acids 248 to 270 (23 residues), see Phobius details amino acids 274 to 304 (31 residues), see Phobius details PF00924: MS_channel_2nd" amino acids 293 to 360 (68 residues), 60.9 bits, see alignment E=1e-20 PF21082: MS_channel_3rd" amino acids 369 to 457 (89 residues), 37.8 bits, see alignment E=2.1e-13

Best Hits

KEGG orthology group: None (inferred from 93% identity to amc:MADE_01467)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (479 amino acids)

>MIT1002_03343 Potassium efflux system KefA precursor (Alteromonas macleodii MIT1002)
MDKKSFTIFVITDKKRAVIPRSNYIHATAVWQTSEVENMNVDSLTQHFEEKLALVKASVM
SDSFVIQLTTIAIIYCVAFLLARQVKKPFKFTREKPQQGAHTVHGFLYNLGEALFPLITI
SMLKLTTVLGAQFQFDAWLLEIAVVVALMLFVNSLINGFVENNTIAAFMRWVGLPILFLH
LVGVLPLITSALESIAISVGNVEISAYGVTRVLLFGGLLFWLGRSSNAIGQDIIRNHKSL
DVSTKEVFAKLFEVALFCVVFLLLLNVMGINLTALAVFGGAVGVGLGLGLQSIASNFISG
IIILLDKSLTVGDYVELEDGQKGIVREFKMRYAVLETYDGKDVLVPNEKFISSLLINWTH
KNQKQRYRIDFSVAYKTDIRAMVEIIKEAVSEHPQVISGDDVPFEELPDCEIDSFGDSGV
NMFVEFWMEGVDDGKNRVGGDLLLTVFETLREHNIEIPFPQREVRVINEQGIGIRNTTP