Protein Info for MIT1002_03336 in Alteromonas macleodii MIT1002

Annotation: curlin minor subunit CsgB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07012: Curlin_rpt" amino acids 175 to 209 (35 residues), 28.2 bits, see alignment 1.5e-10 amino acids 198 to 231 (34 residues), 25.4 bits, see alignment (E = 1.1e-09) amino acids 288 to 321 (34 residues), 24 bits, see alignment (E = 3e-09)

Best Hits

KEGG orthology group: None (inferred from 90% identity to amc:MADE_01503)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (481 amino acids)

>MIT1002_03336 curlin minor subunit CsgB (Alteromonas macleodii MIT1002)
MKKTKIASALLLVAATGWASAQEVPASKTVDFSASADFIAAAEGNEITLIQTAPEGNEVG
NESILSQEGDLNAIFVEITGDANEVLASQMQSGNTFFASVTGNGNFLESEQDSLNSTADV
VVEGDDNTVSLVQLGDGGPIGFIFNRSINSISGSGNTLSVYQGDGGNWANNAIAGNDNTV
FVDQSGDWHESYVRELSGDANVIDVIQDGYYNVSDLTVIGSENEVEIDQDGDRNAVGWSM
VGDGNVLGFEQDGDGNEITTGVFEGSGNEVNIDQIGDVNLATVETIGGQANTFEINQVGE
GNTAYAGVIGLLNEFDLTQVGDANEISTVNFDGLFNTVEIEQDGDANLALAQAGIGDATY
YADGNIIEMSQEGVENTASVELASDVTSSYNEIMVSQTGELNLLDLLVNGDDNIVSVMQE
GVGNWVTDDAGGQFVISGDMNTFEVTQMGNDNLVTGSITGNGGTVSVTQVGDYNVATVVQ
M