Protein Info for MIT1002_03320 in Alteromonas macleodii MIT1002

Annotation: Putative electron transport protein YccM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 698 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 406 to 424 (19 residues), see Phobius details amino acids 437 to 458 (22 residues), see Phobius details amino acids 484 to 509 (26 residues), see Phobius details amino acids 543 to 559 (17 residues), see Phobius details amino acids 579 to 597 (19 residues), see Phobius details amino acids 606 to 623 (18 residues), see Phobius details PF12801: Fer4_5" amino acids 482 to 528 (47 residues), 47.4 bits, see alignment 7.6e-17 amino acids 588 to 620 (33 residues), 19 bits, see alignment (E = 5.6e-08)

Best Hits

KEGG orthology group: None (inferred from 56% identity to swd:Swoo_2253)

Predicted SEED Role

"Nitrous oxide reductase maturation protein NosR" in subsystem Denitrification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (698 amino acids)

>MIT1002_03320 Putative electron transport protein YccM (Alteromonas macleodii MIT1002)
MRIAFSSIIFLLFLSTNVLAQSDATDIPQDIYKIFPNATRVGEMHTDIKVTPVYQLQQLL
GYVFESNDFVDFIGFSGKPVNVVIGLDTQGNVVDLFVKQHSEPIFLHGLGEKSMFDFVAQ
YQGHSVKERFIIGGKSNVGKDATYFDGVTKATVSVLVINDTIVTSALAVARAKLDGFVAP
SNNIINPDFYEPLTFSELVDKGYIQKHQITQQNTEGLSREVVRAVDDIQSEFALDGDIIA
EHYYAFLSLPVVGKNLLDEEEFARLQENLNPGEMALMVLNTKGFSFISDEFIPQTTPEHL
RVSQGGFPTAIRDIDFYSFYDPAFSQALPDYNEIKVLRVKSKGGLSLDQEMEIAISVPFK
PSFFEQDEHLFPLKVTLPSELFMENPEAQLAKPIPLWQKIWRDRTLTISTTVVYLVALSL
FFAFQQRLTPYTKFVHTVRAFSLVFVLFFIGFYAQGQLSVVNIYTLLLDIVDGFSLEVYL
LDPVIFILWSFVFVSLFIVGRGLFCGWLCPFGALQEMMGILAEKLRIKQIRIKPQHHKRA
QKIKYGLLIGLVACSFYSLDLAEKLAEIEPFKTSITLHFVRYWPFVLYSVLLLLLSLKIH
KVYCRYLCPLGAGLAILGRFPFVKLLTRKDACGNPCQLCKQKKCGIDAIEQDGSIDYAEC
IQCLECVVTLDNPDLCKIDKYKKKKVPTRVKNLNPVRT