Protein Info for MIT1002_03259 in Alteromonas macleodii MIT1002

Annotation: Sensor protein QseC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 144 to 171 (28 residues), see Phobius details PF00512: HisKA" amino acids 227 to 287 (61 residues), 51.2 bits, see alignment E=1.6e-17 PF14501: HATPase_c_5" amino acids 335 to 433 (99 residues), 33.9 bits, see alignment E=3.8e-12 PF02518: HATPase_c" amino acids 338 to 433 (96 residues), 46.7 bits, see alignment E=5.9e-16

Best Hits

KEGG orthology group: None (inferred from 61% identity to gag:Glaag_4467)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (439 amino acids)

>MIT1002_03259 Sensor protein QseC (Alteromonas macleodii MIT1002)
MSLRLKLIAIIAPVFFVLWLTASYFSITQLKSEINQAMDSRLASTARMMNNLMLSDQNSV
GNLGLSPNGTFNDAGTLKGLACKISALNGEIIANSHPQELTLPDTLPSGLDTVIVENIEW
RVFSLKTEKHTISIAEKLSERHAIFVQMVIVSALPTLISLVVSLLVIWFALGRELRPLQR
LKDAITNRSPNDLNPIRLRHNLQEITPLIDSQNQLFTKLENAIEREKAFTDNAAHELRTP
LTGIISQLQVAKVTQGETQQRAIEKSLFSARRLQSLLENLLLLARVDKAPIEQHVQPWEL
SKELSNLLTELGCENNDIQVHTNVSKRLSHIPVFAFTIVMKNLIDNARQHGVKGMPISIV
IEEDDNEFVIRVSNHATLNTETLAYMTRRFWRESHSQGNGLGLAIVNALVEALNGTFNVN
YEGDQLHVMITFPTSPNTE