Protein Info for MIT1002_03246 in Alteromonas macleodii MIT1002

Annotation: HPP family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 96 to 114 (19 residues), see Phobius details amino acids 122 to 141 (20 residues), see Phobius details amino acids 147 to 166 (20 residues), see Phobius details PF04982: TM_HPP" amino acids 15 to 171 (157 residues), 152.4 bits, see alignment E=4e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (301 amino acids)

>MIT1002_03246 HPP family protein (Alteromonas macleodii MIT1002)
MLNTLKRFWGFQNNVVVSEKVVATIGGMLAIFLCFFLTTWLLGTEGAAAILPSMGASTVL
LFAVPHGQLSTPWAFFAGNILSAIVGVTSAQYIENLFIAAPVAVSLSIFIMHLSRSLHPP
GGATALAAVIGGSAITDLSYWYVLTPTIINCMILFAVAILFNNLFHWRRYPQSLMRYKGI
GYNPDTRRIKMRHIHEAINRSELVIDASDEQIKHIIDLADTILHEELIAGFELEMGAFYT
NNQPGRLWSVRQVVDERKHNCKHKYLLIYRVVEGDGKGFSDCCTYQEFAEWAKMKMTPSQ
V