Protein Info for MIT1002_03236 in Alteromonas macleodii MIT1002

Annotation: putative permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 17 to 40 (24 residues), see Phobius details amino acids 57 to 82 (26 residues), see Phobius details amino acids 88 to 138 (51 residues), see Phobius details amino acids 196 to 221 (26 residues), see Phobius details amino acids 233 to 262 (30 residues), see Phobius details PF03773: ArsP_1" amino acids 8 to 268 (261 residues), 160 bits, see alignment E=4e-51

Best Hits

Predicted SEED Role

"PROBABLE INTEGRAL MEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>MIT1002_03236 putative permease (Alteromonas macleodii MIT1002)
MSEFLTQWQEAAHTTLGLFWMAFWAFALGYLISSMIQVFVTKERMQKSMGKAGPKSVALG
TFFGFISSSCSFAALSTTRALFVKGAGLVPSLAFMLASTNLVVELGIIISIFLGWQFVVG
EYVGGILLILAVWLLVKLTCKKELEEKAQSHAKKAEGGDSQANSKEKGWKDKIMSKAGWH
QVASRYTMEWKMVWKDVTIGFTVAGIIAVFVPTEFFQSLFIGAGQESNSFLQILAQTIVG
PVAAFFTFIGSMGNIPLAAVLFGQGVSFA