Protein Info for MIT1002_03221 in Alteromonas macleodii MIT1002

Annotation: Tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 PF00589: Phage_integrase" amino acids 113 to 282 (170 residues), 109.8 bits, see alignment E=6.4e-36

Best Hits

KEGG orthology group: None (inferred from 75% identity to amc:MADE_00295)

Predicted SEED Role

"Integrase/recombinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>MIT1002_03221 Tyrosine recombinase XerC (Alteromonas macleodii MIT1002)
MNAACPYTLYLGRLAPNSQRSIASQLNSIADLLRWPEKKREMMYHKIDFQQASHIKALLI
ANGWSARSINRAITAIRSIVSVAVMSGLAPEIQLVQLRAISKVSHGAHDGKPLSVKQVQT
LFAYLKQNTSVLGIRNYAVLATLLGTGLRRSELVALLLQDYVAGSALIVRKGKGNKSRTV
HLPEWAQHALNEWLALRGKHKGYLFHRVARGGNIQHDTHLSSCAVYSLIRKSLSAIGIER
VSPHDLRRTFITRLLEQNVDLNTVRQMAGHADISTTIMYDKRSEKVMQQAASLLSYKL