Protein Info for MIT1002_03200 in Alteromonas macleodii MIT1002

Annotation: RDD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 transmembrane" amino acids 48 to 74 (27 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details PF06271: RDD" amino acids 39 to 178 (140 residues), 54.6 bits, see alignment E=7.4e-19

Best Hits

KEGG orthology group: None (inferred from 83% identity to alt:ambt_01395)

Predicted SEED Role

"FIG023103: Predicted transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (194 amino acids)

>MIT1002_03200 RDD family protein (Alteromonas macleodii MIT1002)
MARHDRKAKKKSPSSNPLKTKDDKNTPNSESGSSSLERAGFVRRLLAMIYDTLVATAVGM
CAAMVMIVTLVVMLKNGALDLQGYAEPADLIQASFGYKLLIQTWVGLWIAGFFLWFWRRG
GQTLGMRAWRLRIYSTVEEPMTWPRLFIRLIASLGGLGTLLVLFDFKNKQSLQDRLAKTE
VLKLTKEANDHKSW