Protein Info for MIT1002_03170 in Alteromonas macleodii MIT1002

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 41 to 59 (19 residues), see Phobius details amino acids 67 to 85 (19 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 134 to 154 (21 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details amino acids 248 to 273 (26 residues), see Phobius details amino acids 298 to 319 (22 residues), see Phobius details amino acids 331 to 356 (26 residues), see Phobius details amino acids 387 to 409 (23 residues), see Phobius details PF11449: ArsP_2" amino acids 56 to 410 (355 residues), 409.4 bits, see alignment E=7.4e-127

Best Hits

Predicted SEED Role

"Predicted manganese transporter, 11 TMS" in subsystem Transport of Manganese

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>MIT1002_03170 hypothetical protein (Alteromonas macleodii MIT1002)
MDTASHTSKSAKAMVRYKHLPSFTSALLKNVFFPHLTNKRLLMPLFIAILLTYNSTRAVT
LSVLSDAFFQVAAFVYASLALYYVATLRVSAEAIGNYMKAHPVHEVGLSALLGALPGCGG
AIIVVTQYTRGVTSFGAVVAVLTSTMGDAAFLLLAQAPLDALTVMAVSVTVGAITGLVVN
KFHNYQAPEADGALQQSQNCDKPKTVSHKAISLSKVFWMIASLPSLAIALGLAFQLPVHS
YLAISESTLTLIGAALCMSSLGLWSFCGSGSGYASITKEDLIPPPPKWQEKAALDTQFVL
AWVVLAFLMFELSVVWFGLDITGLLQSMGPGLVGLAIIIGFLPGCGPQILVTSLYLNGAV
PFSAQLGNAISNDGDALFPAIALSPKAALIATVYSAIPAFLVGYGYWYLFE