Protein Info for MIT1002_03165 in Alteromonas macleodii MIT1002

Annotation: Cell division inhibitor MinD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF10609: ParA" amino acids 2 to 243 (242 residues), 50.4 bits, see alignment E=7.6e-17 TIGR01968: septum site-determining protein MinD" amino acids 2 to 265 (264 residues), 373.7 bits, see alignment E=2.2e-116 PF13614: AAA_31" amino acids 3 to 156 (154 residues), 71.6 bits, see alignment E=2.9e-23 PF06564: CBP_BcsQ" amino acids 3 to 148 (146 residues), 29.5 bits, see alignment E=1.9e-10 PF09140: MipZ" amino acids 4 to 165 (162 residues), 40.5 bits, see alignment E=7.5e-14 PF01656: CbiA" amino acids 5 to 225 (221 residues), 69.8 bits, see alignment E=7.7e-23 PF02374: ArsA_ATPase" amino acids 5 to 40 (36 residues), 31.6 bits, see alignment 3.7e-11

Best Hits

Swiss-Prot: 79% identical to MIND_SHIFL: Septum site-determining protein MinD (minD) from Shigella flexneri

KEGG orthology group: K03609, septum site-determining protein MinD (inferred from 99% identity to amc:MADE_01605)

Predicted SEED Role

"Septum site-determining protein MinD" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>MIT1002_03165 Cell division inhibitor MinD (Alteromonas macleodii MIT1002)
MAKIIVVTSGKGGVGKTTSSAAISTGLALAGHKTVVIDFDVGLRNLDLIMGCERRVVYDF
VNVINKEASLKQALIKDKRTENLFILPASQTRDKDALTVDGVQAVLDELKKDFEFIICDS
PAGIEQGAQMALYFADEAIVVTNPEVSSVRDSDRILGILQSKSMRAEKGEPVKEHLLLTR
YNPSRVESAEMLSVADVEEILAIPLLGVIPESEAVLKASNQGQPVILDEEANAGKAYADA
VKRLLGETVPHRFLEAEKKGFFKRLLGGK