Protein Info for MIT1002_03149 in Alteromonas macleodii MIT1002

Annotation: Gamma-glutamylputrescine oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 transmembrane" amino acids 339 to 356 (18 residues), see Phobius details amino acids 385 to 403 (19 residues), see Phobius details PF01266: DAO" amino acids 42 to 409 (368 residues), 187.2 bits, see alignment E=2.3e-58 PF00890: FAD_binding_2" amino acids 43 to 99 (57 residues), 21.7 bits, see alignment 3.9e-08 PF13450: NAD_binding_8" amino acids 44 to 74 (31 residues), 22.1 bits, see alignment (E = 5.4e-08)

Best Hits

KEGG orthology group: None (inferred from 85% identity to amc:MADE_01621)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (452 amino acids)

>MIT1002_03149 Gamma-glutamylputrescine oxidoreductase (Alteromonas macleodii MIT1002)
MTYDPLISRGVSSMLPAANSYWHATHKPPTLPPLNKKVNTEYLVIGGGYTGLSAAITLAQ
AKQEVTLLDANSPGFGCAGRNGGFILSGSGRLSLSAIEDKWGRDTAKAMQGEFDGAVHLL
KQRIADFDIQVDLVEGPYLKLAHNPKQAELLRASAKHLESHFNVPSSPLSEKDLIARFGI
EGAYGGVELKGACLHPLKLVSEYARVAKKLGATLFYDSPAIRIEKHKTGYVVATPSGSVS
AKHILIATNAYTPKRFHDSVDNKQFPVQSSIFVTAPLSSEQRAKSGLTTPISFMDTRMMK
YYYRVLPDGRLLFGGRGAVKGKDADNASEKQRLYRAMVKSFPSLSGIAMDYFWSGWVSVS
LDSMPRIFIDNEVSGNNSNRSSGNIGYAMGYCGSGVSFAAFAGQRLAQRMMGSNDVDLSL
PLYRSPLKTYPFAKARRLALHGLYQWAKIAER