Protein Info for MIT1002_03126 in Alteromonas macleodii MIT1002

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 772 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF07715: Plug" amino acids 61 to 170 (110 residues), 72.3 bits, see alignment E=4.5e-24 PF00593: TonB_dep_Rec_b-barrel" amino acids 286 to 737 (452 residues), 93.8 bits, see alignment E=2.3e-30

Best Hits

KEGG orthology group: None (inferred from 84% identity to amc:MADE_03368)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (772 amino acids)

>MIT1002_03126 hypothetical protein (Alteromonas macleodii MIT1002)
MKTNTDVSKALASKLSPVALAVAMTVPAISNIAVAQEAEATEEQQFEAITVTATKRPQVI
YEVPIAISAFDGDKLADQGITDLTDVGKFVPNLNVTGFSAGHTSSVNPFIRGIGLQDHLI
TTDPGVSVYVDGVYLGRQVGQNWSLNNIERIEVLRGPQGTLYGRNSIGGAINIITKEPDQ
GDVTKINTEFGTRGRVKADLFVNHGLSETVAFNMNLAFNKRDGLGEFINVPNAEYDVGET
EDISGRVSLKWEPSNDFRMVLTADANNGDGGLRPYTVLIDEVPTGRYYTGIDGNGDPIPS
GPLRNTDVIPTGTDRYDNATSTEAVTGVSNEARGLSLTTEWDINDDYTAKVVASQRTSKY
KAGLDDDGTAFSLDQFPERGEADQTSIELQLNGYINEYTDFVTGLYYFNEEGSNRQGDDS
NFNGGPNLLQLDQETTSKAVYLNMRHDLTDDLSVSGGIRYTEDEKDASANVFGPLGTISD
SNDWNEVTWELATNYTFDNGLTGYATIQTGYQGGQYPARPYFLISEFADEGGFGALGSGD
QVALEAAVNAVVSDNDFKATDNITATNYEIGLKGRFTEYLDMSISIFNTEYENLPVQFSE
TTESGFITRVIPTKQTSRGIEWDGTLSLGQFSLQGSVGFIDVDVDEVVNSDGAILADVAP
LTPKWTVAIAPSYEFELGDGSSIRARIDYSWRDDMYGEPLSAPERMTKLESRELVNFDIA
YTPANDAYTVALYGRNIFDERYDNARLNTNDYILQILSNDASEFGVRFSTEF