Protein Info for MIT1002_03073 in Alteromonas macleodii MIT1002

Annotation: Inner membrane protein YgaZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 transmembrane" amino acids 23 to 53 (31 residues), see Phobius details amino acids 59 to 81 (23 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 135 to 155 (21 residues), see Phobius details amino acids 161 to 182 (22 residues), see Phobius details amino acids 189 to 206 (18 residues), see Phobius details amino acids 212 to 231 (20 residues), see Phobius details PF03591: AzlC" amino acids 19 to 157 (139 residues), 136.1 bits, see alignment E=5.8e-44

Best Hits

KEGG orthology group: None (inferred from 91% identity to amc:MADE_03312)

Predicted SEED Role

"Putative amino acid transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>MIT1002_03073 Inner membrane protein YgaZ (Alteromonas macleodii MIT1002)
MSQLSSNSGLKQGVIDGLPLLGGYIPVAISFGVIAVQAGFSTLEATLISVFIYAGASQFL
LVAMVASGAPLWLAVCMTLLVNVRHVVYAPNLVPYLPQSKAWPYLMHGLTDQIFALAHTR
LPLMDDAKKVDWFKGVSMVAWLSWIVGTALGGIAGDSLTQQWPILDSVMPFALPALFLVL
LAPKFSSKLWSATLFVTMTAALFLALSAFKNAAIPLAALCGAITFYLLTSHVERKQSHAR