Protein Info for MIT1002_03049 in Alteromonas macleodii MIT1002

Annotation: Sensor protein TorS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 690 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 33 to 58 (26 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 95 to 113 (19 residues), see Phobius details amino acids 119 to 139 (21 residues), see Phobius details amino acids 151 to 170 (20 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 219 to 240 (22 residues), see Phobius details amino acids 247 to 268 (22 residues), see Phobius details TIGR02916: putative PEP-CTERM system histidine kinase" amino acids 6 to 688 (683 residues), 564.1 bits, see alignment E=2.6e-173 PF02518: HATPase_c" amino acids 582 to 689 (108 residues), 66.5 bits, see alignment E=1.4e-22

Best Hits

Predicted SEED Role

"Sensory transduction histidine kinases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (690 amino acids)

>MIT1002_03049 Sensor protein TorS (Alteromonas macleodii MIT1002)
MISDVGYGLNSLAHLALLLLLLTVRKPGVAKHLLVLATAATFLWSTTLITSLFGPISLSW
LLSADVLKQLAWLLFLAGCIQTSFSNIFDVLKRPVTLIIIAPALAALLAPYLLVVNPAWS
FLVLIVLSLEVLVLLEVVYRQAGREQWAFKPIIIYLGATNLFEFVTYANATMVNQVEIGY
IAARGYIYFLLMPLLVISIRRIHHWGIDIFISRDVVLHSSLLLVAGGYLFVMAVVGYAIN
YMGGNWGATVQIILVVMSFALLATVFLSNGFRTKIKVFITKHFFANQFDYRVEWVKLTQW
LTRAGDTSSDVYHAGLTGMLNAIQYESGLLFKVTQNGYECVAKASPITNTALTDNNESST
GSKENNATCTTLETLASYSDKNGWIIDTDAYLVKPFDYEGLKLDREALKAWGYQLFVPFL
KEGKLWGFAVLASGDNEKITLNWEVKDYLTAVSEQVGTYMQHHEAAQVVAENAQFAAFNR
MSAFVLHDLKNVLAQVDLILANAQQHKHNPEFIEDTFETLEHTKARMEKMLKQLTDKKAV
EEGVNSEFLISELAKDVVNNRCSGLRPLPTVHVLKETAVTVDKDKVANVLYHLISNAQQA
TADDGEVDVVITGNSDNKTQLVLIEDTGSGMDKAFIEERLFKPFDTTKGNAGMGIGAYDA
KTYIESIGGKLTVQSEPGRGSCFTLYFPIG