Protein Info for MIT1002_02985 in Alteromonas macleodii MIT1002

Annotation: yecA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 PF03695: UPF0149" amino acids 10 to 174 (165 residues), 147.9 bits, see alignment E=1.9e-47 TIGR02292: yecA family protein" amino acids 12 to 153 (142 residues), 57.9 bits, see alignment E=5.1e-20

Best Hits

Swiss-Prot: 40% identical to Y3357_EDWI9: UPF0149 protein NT01EI_3357 (NT01EI_3357) from Edwardsiella ictaluri (strain 93-146)

KEGG orthology group: K09895, hypothetical protein (inferred from 95% identity to amc:MADE_00848)

Predicted SEED Role

"FIG001590: Putative conserved exported protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (188 amino acids)

>MIT1002_02985 yecA family protein (Alteromonas macleodii MIT1002)
MEKQLDYDSVSNKLSQQGVIVDAAEVHGILCGMLCGGMSLTDQKWLEALSETINQGDAFS
DPTKHLLNNLFNQTCQQLLEPEFALNLLLPDDQAPINDRGAALINWVQGFMLGFGLHQQD
LMQCSDDVKEALEDFSDISRMEEPMDADEESEKALFEVEEYVKISAILCFSELGQSLLDD
QQDTPSVH