Protein Info for MIT1002_02948 in Alteromonas macleodii MIT1002

Annotation: Putative peroxiredoxin bcp

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF08534: Redoxin" amino acids 42 to 193 (152 residues), 50.9 bits, see alignment E=1.6e-17 PF00578: AhpC-TSA" amino acids 42 to 184 (143 residues), 74 bits, see alignment E=1e-24

Best Hits

KEGG orthology group: None (inferred from 59% identity to pat:Patl_0352)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (213 amino acids)

>MIT1002_02948 Putative peroxiredoxin bcp (Alteromonas macleodii MIT1002)
MKRLVAMAMLMFGCIAGASNAYALERGTIAEDADSVTPLLNGQVAPKTTLKMADGSPVSL
QALTMQKPSIVLFYRGGWCPYCNEQLAQLKDIEKDLVDMGYQILAISPESPDRLQEQKLE
TEFLVTLLSDDKLDTIREFGVGFYLDTVTELKYKTYGINLTKDESGNSVLPAPSIFMLNK
KGQVLFSYVNPDFKVRPSADLVLAVAKTLKKEM