Protein Info for MIT1002_02931 in Alteromonas macleodii MIT1002

Annotation: Caffeine dehydrogenase subunit gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 169 PF00111: Fer2" amino acids 5 to 52 (48 residues), 33 bits, see alignment E=6.9e-12 PF13085: Fer2_3" amino acids 32 to 93 (62 residues), 27.1 bits, see alignment E=5.2e-10 PF01799: Fer2_2" amino acids 72 to 160 (89 residues), 96.9 bits, see alignment E=9.5e-32

Best Hits

KEGG orthology group: K13483, xanthine dehydrogenase YagT iron-sulfur-binding subunit (inferred from 82% identity to amc:MADE_00927)

Predicted SEED Role

"Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (169 amino acids)

>MIT1002_02931 Caffeine dehydrogenase subunit gamma (Alteromonas macleodii MIT1002)
MATLNLNGRDVSLPDDPRTTLLDFLHQHLSLFGTKKGCDHGQCGACTVIADGKRINACLV
FAFQLEGAEVTTIEGIGEGESLHPLQKAFIERDAFQCGYCTSGQICSGVSLLREMKNEDP
SAVTYSQTRHSKASLKEDISERMSGNLCRCGAYPNIVDAITDVIALERQ