Protein Info for MIT1002_02906 in Alteromonas macleodii MIT1002

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 171 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 132 to 151 (20 residues), see Phobius details PF06127: Mpo1-like" amino acids 1 to 152 (152 residues), 69.3 bits, see alignment E=1.3e-23

Best Hits

KEGG orthology group: None (inferred from 81% identity to amc:MADE_02639)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (171 amino acids)

>MIT1002_02906 hypothetical protein (Alteromonas macleodii MIT1002)
MKNLEQHLSEYAKYHRDQRNIYTHYVGIPLIVFSVFCLLSKPAFLVSAPIFWDMIISPAL
FVWAIGNAFYIKLDIKLGIVMTLITGAMVYFAQPIAQNEVGTWLAISLGIFIGGWVLQFI
GHHYEGKKPAFVDDIMGLAIGPLFVLAELSFELGLRSALKEEIERRSGSVK