Protein Info for MIT1002_02873 in Alteromonas macleodii MIT1002

Annotation: tyrosine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 522 transmembrane" amino acids 24 to 43 (20 residues), see Phobius details amino acids 428 to 450 (23 residues), see Phobius details amino acids 490 to 513 (24 residues), see Phobius details TIGR03007: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily" amino acids 10 to 511 (502 residues), 528.2 bits, see alignment E=7.7e-163 PF02706: Wzz" amino acids 12 to 97 (86 residues), 28.3 bits, see alignment E=8.9e-11

Best Hits

KEGG orthology group: None (inferred from 72% identity to alt:ambt_03560)

Predicted SEED Role

"Lipopolysaccharide biosynthesis chain length determinant protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (522 amino acids)

>MIT1002_02873 tyrosine kinase (Alteromonas macleodii MIT1002)
MQDLQQTLVQVLDYIKGVWIKKRYVIIFSWLICPVGFVYVASLPDVYSSKAQVFVDTRSV
LQPLLRGLAIQTNPDQEIQMMAKTLLSRSNVEKIARESDLDITTTTEAEFETLVTNLTKD
IQLSSTGRDNIYNISFSNEAPSTAQRVVQETLDLFVEGALGNNRKDTDTAGRFLDEQIAE
YESRLTEAEQRLANFKRQYNDILPLAGTYYSSLQGLNDELEATRLQIRQAQQQAETLKGQ
ISSSKQNDSFGVTNRDEPVLSTRYDERIKSLEEELDRLTLRFTDLHPDVIETKALLESLE
ESRSKEIEAFLTADGDEQNQPLSELNREIKLEASRLESQIASLRVKESDLQSKIAGLESK
VDLIPQIEAESSALNREYGVTKQKYEELLSRRESADLSRRADVSAEELQFRIIEPPLLPK
RPSGPNRIIFYTVVLVLGFGSGIAIAFLISQLNPILIRPKQLLNVSDYPIWGTVTHLNIE
QINKTNRNRLLVFLLSSGTILAMYGALVAAEIMNIDLFGGLL