Protein Info for MIT1002_02825 in Alteromonas macleodii MIT1002

Annotation: putative ABC transporter ATP-binding protein/MT1014

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 PF00005: ABC_tran" amino acids 20 to 171 (152 residues), 108.4 bits, see alignment E=2.3e-35

Best Hits

Swiss-Prot: 32% identical to LOLD_BACTN: Lipoprotein-releasing system ATP-binding protein LolD (lolD) from Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)

KEGG orthology group: K02003, (no description) (inferred from 76% identity to amc:MADE_01332)

Predicted SEED Role

"AttE component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>MIT1002_02825 putative ABC transporter ATP-binding protein/MT1014 (Alteromonas macleodii MIT1002)
MLTIKDLKKSFSQTGAPLINNLNLTVKTGESVSVQGASGCGKSTLLSLIAGFETPDGGDI
AVNGLSIAGNSKLDNTFKASDIDNFRKQHLGIVFQSFNLFDCFNAWDNIAFTARLKGNVD
NDYQLALMEQLGILPLAQKPLSQLSGGEQQRCAIARALVHRPSLILADEPTGNLDETTSE
TVSDLLFKTCKETNTSLVVVTHSQDVAIKADTALRLHKGILESVKYKTTEQTLPSPVAPS