Protein Info for MIT1002_02795 in Alteromonas macleodii MIT1002

Annotation: putative FeS assembly SUF system protein SufT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 TIGR03406: probable FeS assembly SUF system protein SufT" amino acids 6 to 175 (170 residues), 252.3 bits, see alignment E=1.1e-79 PF01883: FeS_assembly_P" amino acids 79 to 152 (74 residues), 64.4 bits, see alignment E=4.6e-22

Best Hits

KEGG orthology group: None (inferred from 97% identity to amc:MADE_01362)

Predicted SEED Role

"probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (177 amino acids)

>MIT1002_02795 putative FeS assembly SUF system protein SufT (Alteromonas macleodii MIT1002)
MKQKMVTTERDCKARLVPAGNPTVIPEGEFVNITQELGGNYTVTWRGNMYRIDGTDAGAI
GRKAMTLSFDAPEDGNISEQQVWDALETIFDPEIPINLVSLGLIYKVEIDQDTSSVNIDM
TLTAPGCGMGPVLVGDVEYRVAMVPHVKNVNVELVFDPAWSRDMMSEEAQLEAGLFF