Protein Info for MIT1002_02530 in Alteromonas macleodii MIT1002

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1640 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 260 to 283 (24 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 53 to 125 (73 residues), 91.9 bits, see alignment (E = 1.7e-30) TIGR03504: FimV C-terminal domain" amino acids 1596 to 1639 (44 residues), 56 bits, see alignment (E = 3.2e-19)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1640 amino acids)

>MIT1002_02530 hypothetical protein (Alteromonas macleodii MIT1002)
MKLHLTGLLLLTLCLSGPIITVDAQERATFLKGPKDATDQYSGLEYGPIDANDTLWRIAE
RYRQNNNLSVYQVMTAIYELNPNAFENGNLNLLVDGAVLKLPSERYIARIDKQKAQMRAE
QDDRAFAEMLNKPGSSVRNIKPASPLVNQQDLTQTQTDIEQKITRLDQEQTRQFDELRMQ
FAASLENVEAILNENRRLYERVEAVNGELETLRGQVEGDVKSQLDMQVALQQELLDMIKA
EQAQREAEKQSSFLSALTSPLSLIIGSAILSLLLVGGLIMWLLKRNSKPDEAPAAGPTIT
ADNDEVPVPDSDIGDLSSALAPDFDDKAELSDDDLFNDDDLLDDVLTSDLEESLDDELET
FADLEDDMLVPDDGSDDLFEAGDDELDQSELDSLFDDDDLSDKVLNENDTDDLEGFDLSG
DDDIFDEDAADESEPETEVADEAASTDDDDFDIDDLLDDVQSQDAAELESDELDESGDID
PDDILAEVKGTAESDNVDEDDIDALLASSVDDLSDADEETESVSSLPTVEDEDDKPEISI
DDLLEEHGVDAGLTDELDSNDDLINEDMLSKLDDEINQQNKEIDKITDDLLNEIEQIEMM
GGLGEEGDEDEDDLEEEITTSSPSPQSIQSLDAITDDLDEIVTDEIETNADFSDPLSDEL
IAELQAEDELAEEPSADQMPSADQMPSADDELDESASSDLPTQSDEEGDFDDPFTDELLA
ELEAELDGEPEVSPEAHEEDVDLETPEGDEEDASEDDFSDPLTDELLAELEAEESKSSED
VDLLTDELLSELESEIEPDDETDAEFEPEVEFESEPEAELEADIEDEVELETEAEGEPQS
ELESELGTEVEAEQDAEIEPELEAELESEPEPESELEFEADSESEFEQDFDSETELDQEA
EEKAEPEADLEDEVELEAEAEGEPESELDSEPEFDTEIGAEQDAEIEPELETELESEPEP
ESELEFEVEPELELESELEQDIDSETEQDQEPEEKVEPETEAEPEPEADLEDEVELEAEA
EGEPESELDSEPEFGTEIGAEQDAEIEPELETELESEPEPESELEFEVEPELELESELEQ
DIDSETEQDQEPEEKVEPETEAEPEPEADLEDEVELEAEAEGEPELELDSEPEFGTEVEA
EQDTEIEPELEAELESEPEPESELEFEAEPETDSEDEVELETEAEAELQPETGVEPELEA
VDEDAEEKAGQTSDDPLDDAIEAFERQMMDDIPSFSQMDTEEPLAQEKPSAPAEDASAED
SDEYDDSLLNAAYDEVESFELEQEIDGVVDGEDEGDEISSESSAAEESSSPEETDLNQSD
SDKNSEEDFNELDDVPGLDDWLSASDDDDHVDDNEILDDLDSAEFDELLQSLESDAIVDT
SDVDTSEIESDDDGQDPEASSAESEDTFELEQEDDEATFELEGSDDNLGFDESDDTFELD
EEDETFELDEDGAFESEQEDDEDTFALEEDDSELALDDLEIPDDVELDIATPTEIEEDEQ
EAQSVETEKAQEDDLKLDNPDLDLAALLSDVDSESDAQKPPEDFLDVEALMDDGDDADAI
DPDSQALDLDVSLSDFTGVSDEDTVIDIDKDAGQNANLDLARAYIEMDDVDAAKELLEEV
MKEGSEEQKQEAAAIIANIA