Protein Info for MIT1002_02498 in Alteromonas macleodii MIT1002

Annotation: Regulatory protein AsnC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 PF13412: HTH_24" amino acids 5 to 51 (47 residues), 46.5 bits, see alignment E=3.2e-16 PF13404: HTH_AsnC-type" amino acids 5 to 45 (41 residues), 48 bits, see alignment E=1.3e-16 PF01037: AsnC_trans_reg" amino acids 72 to 141 (70 residues), 48.3 bits, see alignment E=1.2e-16

Best Hits

Swiss-Prot: 31% identical to LYSM_SACS2: HTH-type transcriptional regulator LysM (lysM) from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)

KEGG orthology group: None (inferred from 47% identity to pha:PSHAb0542)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (144 amino acids)

>MIT1002_02498 Regulatory protein AsnC (Alteromonas macleodii MIT1002)
MYVDLDAKDRELLDILKRDARTPVTVLAEVLSLSRNTVQKRIDRLVNSGVIDGFTIRVNE
QLQPDKIKALMSVELEGLSTTQLISKLRQVNGVERFHTTNGNWDLLIVITAESLAHLDGI
LKEVRGVKGVLNSETSIILSTTEK