Protein Info for MIT1002_02429 in Alteromonas macleodii MIT1002

Annotation: Glucose-resistance amylase regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 PF00356: LacI" amino acids 6 to 51 (46 residues), 65.5 bits, see alignment 5.7e-22 PF00532: Peripla_BP_1" amino acids 65 to 278 (214 residues), 77.5 bits, see alignment E=2.6e-25 PF13407: Peripla_BP_4" amino acids 66 to 313 (248 residues), 47.2 bits, see alignment E=4.4e-16 PF13377: Peripla_BP_3" amino acids 173 to 334 (162 residues), 123.1 bits, see alignment E=2.7e-39

Best Hits

KEGG orthology group: K02529, LacI family transcriptional regulator (inferred from 47% identity to bsb:Bresu_3165)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>MIT1002_02429 Glucose-resistance amylase regulator (Alteromonas macleodii MIT1002)
MNKRPTINDVAALAGVSKRTVSRVINGATNVGKATRERIEAVIQETGFAPDKQARGLSTS
RSYLIGLIYDNPDALYIDQVQRGVLSICSQKGYELVVHPCSYNAEGFVEDCINFVRRSNI
DGVIILPPVSESKLLADALQQKSINYVRMASVDLDDHQNIVVSDDRAALSDLARYMVSLG
HKDIGIISGPQQYYSSKERLEGFVETLNGLGVDVPKNRVIEGKNSFESGIECARQLLIQS
PRVKAIFANNDEMAAGVLKVAHEMGITVPDELSVAGFDDNLLAARVIPALTTVQRPVGDM
AAIAARKIIAHIEGSEVSETETYLVKPHLIIRDSIKKV