Protein Info for MIT1002_02363 in Alteromonas macleodii MIT1002

Annotation: Long-chain-fatty-acid--CoA ligase FadD15

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 PF00501: AMP-binding" amino acids 27 to 395 (369 residues), 231 bits, see alignment E=2.2e-72 PF23562: AMP-binding_C_3" amino acids 433 to 552 (120 residues), 45.3 bits, see alignment E=1.1e-15

Best Hits

KEGG orthology group: None (inferred from 95% identity to amc:MADE_01022)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>MIT1002_02363 Long-chain-fatty-acid--CoA ligase FadD15 (Alteromonas macleodii MIT1002)
MPLDMTANANTTEVITSPLSMLYHWEQSRGNDVFLTQPINGEYHDYTWKQVAEQARKVAA
RLREFDFPQGSRIGIFSKNCAEWFIADLGIMMAGHVSVPIFSTAGPDTVQYVLKHADVQL
LFVGKLDNTAEQVASIPSEYLTVAFPYPNIATKQQWKEFMDIAPITDSPVPDMDDLMTII
YTSGSTGQPKGVVHSYNTACWAARRSLDQLGINQNDRTMSYLPLAHITERVLVELSSYYS
GGKIHFVEDLTTFQRDVGHCQPTLFISVPRLWTKFQMGVLAKMPQKKLDTLLKIPILNKI
VAKKIRDGLGINNARLWASGSAPLAPAVIEWFAKIGIYISEGWGMTENSAYGTGSVPFRH
DKIGCIGKPYDGVDIRTSEEGEIQVKSPCNMLEYYLEPQKTAEVFTEDGYLRTGDKGVID
ADGYVKITGRLKDIFKTAKGKYVTPAPIEAKFMENPIVEQVCVTGTNLPQPVALLVLSEE
AQKKDKAGIEASLKKTFEAINAKLESHQVMDRVIIMKNEWSIENDLLTPTLKVKRHVLED
RFVDIIQGSYRDKLVWVDA