Protein Info for MIT1002_02360 in Alteromonas macleodii MIT1002

Annotation: Exodeoxyribonuclease V beta chain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1311 TIGR00609: exodeoxyribonuclease V, beta subunit" amino acids 32 to 1274 (1243 residues), 799.1 bits, see alignment E=4.5e-244 PF00580: UvrD-helicase" amino acids 34 to 470 (437 residues), 172.2 bits, see alignment E=4.6e-54 PF13361: UvrD_C" amino acids 723 to 869 (147 residues), 40.3 bits, see alignment E=7e-14 PF12705: PDDEXK_1" amino acids 1037 to 1245 (209 residues), 26.3 bits, see alignment E=1.7e-09

Best Hits

Predicted SEED Role

"Exodeoxyribonuclease V beta chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1311 amino acids)

>MIT1002_02360 Exodeoxyribonuclease V beta chain (Alteromonas macleodii MIT1002)
MSYNPTSSDNPIDEQSQPQTDDHSGTEAQLLDVVAMPLKGRHLIEASAGTGKTFNITRLY
LRLLLEKKLTVKEILVMTFTKAATEEIKGRIAATLREALLIWQQAKDNGNEIDSGCDPVY
QYLFNSCDIDESLALLKAAQLELDEASVFTIHGFCQHVITQLAFNSGFAMSLNLGNDTSD
LYLEAAEDFIRKISKSEDEFRLLAESGWHTPEKLLREFNASIKSTLTPILLSEEDIEAAC
KKQLDEAPHTSLAYVKSLLQSVEDNEGLLVEQLIKTPAHKKERPQELAALKAWLRSCVDE
QSYYLPPPEAEAFVKGNRYARNSSGVKEILTPIKDFAGALKKAFGEKDKALSKVPVFKLV
VEAIAFIKSRVEKQKKQLGVIDFDDLIRMLADEVVKPNNTLVPELRKKFPVALIDEFQDT
DAKQYAILDAVYPNPENANESALLMIGDPKQAIYRFRGGDIFTYLKAGRQADYRWVMNTN
WRSVEGMVKAYNRLFYGAPVASNRPADVFGFDIKYNPVEFTPKAAAAKTPLIDPAEQDKV
MKSAVTKRSAMNYVSMCLDDKENAHIMRRKMAQWIAQEIYRLLNEAHFQTANGGTAPVKP
QDIAILVKDRTEAGAIKSVLQQKGLACVYLSDRSNLFASAEAKDVLRLLNGIWHANDTSK
VASSLASPLWGYSAQTLIELLYHEDDAQWDAAIDKVLSLRDMWLQKGCMSVLLYLMQDSY
QPHADSVERALTNYQHLADVLEKASTTHQRPEQLLDWLNKQIHKPESDEELTLRLESDSQ
LIRLITQHGSKGLEYPIVFVPFATGYRDAAKNGNTTSQIFTYYDEEKQDLQMQLGQTPQA
IARVQSESEAEDMRLAYVAVTRAAHRCYMGVVPLTNNERSALARALGVGGDGSNNDWSSV
LNRVADEDASHASHIDGDEFEEVYNGFEQEDELPQLTALQFTGTASEEWRLYSFSAMSRL
TTAGANQSVETGTAAESGATTEPLSQTLPNVPVLQTIRDEEVYASDPLMGEMGTIDADIN
SSAGIESTVSKSDLRFTLEKGASAGNLLHDILEHSDFSAPDWEETGKELVNRFGLDEKRT
PLLYKWLEEALQTPLYPNMQLSMSDLPLAQTLREAEFYFPMNDTQWTQLREVLATHRKNV
ADVIGGEMETAPQLITAKLQGMMHGFIDLIFEHDGQFYVADYKSTWLGDTLDSYTPTALF
HNNQHHLYDLQYLIYCLALHRYLKNTLPNYDPDMHFGGVYYLYLRGMHPENERGEGVFYT
DVPSSVLNRLDGIFASKGDAQQGNSSSNAGSSRQPLEQTSSGQQQFSFDDK