Protein Info for MIT1002_02320 in Alteromonas macleodii MIT1002

Annotation: putative xanthine dehydrogenase subunit A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 PF02625: XdhC_CoxI" amino acids 16 to 81 (66 residues), 58.2 bits, see alignment E=6.5e-20 PF13478: XdhC_C" amino acids 176 to 316 (141 residues), 77 bits, see alignment E=1.9e-25

Best Hits

KEGG orthology group: None (inferred from 87% identity to amc:MADE_01057)

Predicted SEED Role

"Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (330 amino acids)

>MIT1002_02320 putative xanthine dehydrogenase subunit A (Alteromonas macleodii MIT1002)
MSNHVNHLLAQWLPLKNKHKWVLGFIFKTEGSCYRKAGAMMLFSDAGHQLGILSGGCLES
DIVKKVQRVMTDGVSRTAVYDDEDEEDIAFKLGVGCGGVVHLALVPVNESNQYLSLDVVS
KSLSNGKACEWRCAVDGTLGDCTELEDYSAKSRKAVLDTVDGKRMLSVLMQPPTHLLVIG
GGYDATFMTKLASLQGYLVSLWDPRPAQARLEHFPEVNYLIEDPSAEGLRLHMGEHNIQA
AVLMSHHREIDAKALQVLSKQSLTYTAMLGPLHRKQEIMDLAGLGDTNFTQYFASPAGFD
IGGELPEHIALSVIAQCHAVFHTKPTHLSR