Protein Info for MIT1002_02310 in Alteromonas macleodii MIT1002

Annotation: Flavocytochrome YedZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 transmembrane" amino acids 21 to 38 (18 residues), see Phobius details amino acids 57 to 75 (19 residues), see Phobius details amino acids 87 to 105 (19 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 157 to 175 (19 residues), see Phobius details amino acids 184 to 202 (19 residues), see Phobius details PF01794: Ferric_reduct" amino acids 54 to 167 (114 residues), 62.7 bits, see alignment E=1.8e-21

Best Hits

Swiss-Prot: 39% identical to MSRQ_CITK8: Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ (msrQ) from Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)

KEGG orthology group: None (inferred from 80% identity to amc:MADE_01068)

MetaCyc: 37% identical to membrane-bound flavocytochrome MsrQ (Escherichia coli K-12 substr. MG1655)
1.8.5.M7 [EC: 1.8.5.M7]; 1.8.5.M7 [EC: 1.8.5.M7]

Predicted SEED Role

"FIG001196: Membrane protein YedZ"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.8.5.M7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (219 amino acids)

>MIT1002_02310 Flavocytochrome YedZ (Alteromonas macleodii MIT1002)
MPLRKKPFRLSVWQRRSLKGLIHLFALGYIAWLFFAGVTDQLGPDPVNTLINETGTWAIH
FLLLTLTLSPLAKWLPSPEPMQFRRMIGVYTFVYAFAHLLTYIVFEIQLDMALVASEIVS
RPYIIVGLAALLLLFALTATSFKRIQRNMGKKWQKLHNSIYLILPLALLHFSWSQKTFWQ
EPVWYWMIGLILMSPRMKQWYVRYQKKSQKKSRDKNAVV