Protein Info for MIT1002_02177 in Alteromonas macleodii MIT1002

Annotation: camphor resistance protein CrcB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details PF02537: CRCB" amino acids 10 to 121 (112 residues), 95.9 bits, see alignment E=8.8e-32 TIGR00494: protein CrcB" amino acids 11 to 124 (114 residues), 102 bits, see alignment E=1.3e-33

Best Hits

Swiss-Prot: 96% identical to CRCB_ALTMD: Putative fluoride ion transporter CrcB (crcB) from Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype)

KEGG orthology group: K06199, CrcB protein (inferred from 96% identity to amc:MADE_02112)

Predicted SEED Role

"CrcB protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (127 amino acids)

>MIT1002_02177 camphor resistance protein CrcB (Alteromonas macleodii MIT1002)
MPQGLALYCFIAAGGATGACLRYFVTTSVDSLFGKHMPFGTLTVNVVGSFALALLYGFIE
RHDLSDSPYRALIGVGLLGAFTTFSTFSVETLTLLENGLWLKAAANVFLNVGACLIAGWL
AIQLMKG