Protein Info for MIT1002_02095 in Alteromonas macleodii MIT1002

Annotation: 2-hydroxymuconic semialdehyde dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 486 TIGR03216: 2-hydroxymuconic semialdehyde dehydrogenase" amino acids 4 to 486 (483 residues), 838 bits, see alignment E=1.1e-256 PF00171: Aldedh" amino acids 13 to 482 (470 residues), 524.5 bits, see alignment E=1.1e-161

Best Hits

Swiss-Prot: 71% identical to DMPC_PSEUF: 2-hydroxymuconic semialdehyde dehydrogenase (dmpC) from Pseudomonas sp. (strain CF600)

KEGG orthology group: K10217, aminomuconate-semialdehyde dehydrogenase [EC: 1.2.1.32] (inferred from 71% identity to avn:Avin_08730)

MetaCyc: 67% identical to 2-hydroxymuconate semialdehyde dehydrogenase subunit (Pseudomonas putida mt-2)
RXN-8527 [EC: 1.2.1.85]

Predicted SEED Role

"Putative 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase oxidoreductase protein (EC 1.2.1.60)" in subsystem Aromatic amino acid degradation (EC 1.2.1.60)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.2.1.32 or 1.2.1.60 or 1.2.1.85

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (486 amino acids)

>MIT1002_02095 2-hydroxymuconic semialdehyde dehydrogenase (Alteromonas macleodii MIT1002)
MKEYKHFINGDYVGSQSGKTFENRCPVDNHLLGFVHEANEQDVDLAVKSAKTALKGPWGK
MTQSQRTELLNKVADRINERFDEFLEAECLDTGKPHSIARHIDIPRGAANFKAFAETLAN
HPTESFRLDTPDGNGAVNVGHRTPKGVIAVISPWNLPLLLMTWKVGPALACGNTVVVKPS
EETPATTTLLGDVMNECGVPAGVFNVVHGFGAGSAGEFLTTHPLVDAITFTGETSTGEAI
VKAAAVGLRSISMECGGKNPGIVFADCDIDKAIEGTMRSAFVNCGQVCLGTERVYVERPI
FDEFVKRLKEGVAKLKLGRPEDEDANFGPLVSLEHRNKVHSYYKLAVQEGATVEIGGGIP
DMGEALNDGAWIEPTVWTGLPDDARVIKEEIFGPCCHIRPFDTEEEVIALANDTDYGLAA
TIWSENSARSIRVAEQMETGLVWINSWFLRDLRTAFGGAKQSGVGREGGIHGLEFYTELK
NICLKL