Protein Info for MIT1002_02032 in Alteromonas macleodii MIT1002

Annotation: Ycf48-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF14870: PSII_BNR" amino acids 34 to 151 (118 residues), 42.6 bits, see alignment E=4.9e-15 amino acids 112 to 253 (142 residues), 26.9 bits, see alignment E=3.1e-10

Best Hits

KEGG orthology group: None (inferred from 75% identity to alt:ambt_08060)

Predicted SEED Role

"FIG002465: BNR repeat protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (348 amino acids)

>MIT1002_02032 Ycf48-like protein (Alteromonas macleodii MIT1002)
MKKTIAACIAATFAVNYSTTAIAEEAFMAPLVEQSVLLDIDADTFVVIVGERGHVLVSED
GEAFTQKAVPTQSTLTATTVVGDNIWAVGHDAVILHSSDKGETWEIQNFQPDLQRPFLDV
LFFNEKQGIATGAYGLFYRTLDGGKTWTAERHASLLDPMDQEYLEDIRKEDEDFYQQELE
SILPHLNRITLDGDTLYLAGEAGLLAKSTNMGESWERYYVDYTGSFFDIKPLDENTVLAV
GLRGNIFVNRNEGEWEYVQTCSTSTLNSILIGSESKVYALGNNGMMVSAQRPLPTSMRDP
YANLSDCEADEGIVVSQIKDKAALLNATQFNGKNIAVTANGIKTLNLK